/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil ; -*- */ /* * * Copyright (C) 1997 University of Chicago. * See COPYRIGHT notice in top-level directory. */ #include "ad_piofs.h" #include "adio_extern.h" void ADIOI_PIOFS_WriteContig(ADIO_File fd, void *buf, int count, MPI_Datatype datatype, int file_ptr_type, ADIO_Offset offset, ADIO_Status *status, int *error_code) { MPI_Count err=-1, datatype_size, len; #ifndef PRINT_ERR_MSG static char myname[] = "ADIOI_PIOFS_WRITECONTIG"; #endif MPI_Type_size_x(datatype, &datatype_size); len = datatype_size * count; if (file_ptr_type == ADIO_EXPLICIT_OFFSET) { if (fd->fp_sys_posn != offset) { llseek(fd->fd_sys, offset, SEEK_SET); } err = write(fd->fd_sys, buf, len); fd->fp_sys_posn = offset + err; /* individual file pointer not updated */ } else { /* write from curr. location of ind. file pointer */ if (fd->fp_sys_posn != fd->fp_ind) { llseek(fd->fd_sys, fd->fp_ind, SEEK_SET); } err = write(fd->fd_sys, buf, len); fd->fp_ind += err; fd->fp_sys_posn = fd->fp_ind; } #ifdef HAVE_STATUS_SET_BYTES if (err != -1) MPIR_Status_set_bytes(status, datatype, err); #endif if (err == -1) { #ifdef MPICH *error_code = MPIR_Err_create_code(MPI_SUCCESS, MPIR_ERR_RECOVERABLE, myname, __LINE__, MPI_ERR_IO, "**io", "**io %s", strerror(errno)); #elif defined(PRINT_ERR_MSG) *error_code = MPI_ERR_UNKNOWN; #else *error_code = MPIR_Err_setmsg(MPI_ERR_IO, MPIR_ADIO_ERROR, myname, "I/O Error", "%s", strerror(errno)); ADIOI_Error(fd, *error_code, myname); #endif } else *error_code = MPI_SUCCESS; } void ADIOI_PIOFS_WriteStrided(ADIO_File fd, void *buf, int count, MPI_Datatype datatype, int file_ptr_type, ADIO_Offset offset, ADIO_Status *status, int *error_code) { /* Since PIOFS does not support file locking, can't do buffered writes as on Unix */ /* offset is in units of etype relative to the filetype. */ ADIOI_Flatlist_node *flat_buf, *flat_file; struct iovec *iov; int i, j, k, err=-1, bwr_size, fwr_size=0, st_index=0; int num, size, sum, n_etypes_in_filetype, size_in_filetype; MPI_Count bufsize; int n_filetypes, etype_in_filetype; ADIO_Offset abs_off_in_filetype=0; MPI_Count filetype_size, etype_size, buftype_size; MPI_Aint filetype_extent, buftype_extent, indx, filetype_lb, buftype_lb; int buf_count, buftype_is_contig, filetype_is_contig; ADIO_Offset off, disp; int flag, new_bwr_size, new_fwr_size, err_flag=0; #ifndef PRINT_ERR_MSG static char myname[] = "ADIOI_PIOFS_WRITESTRIDED"; #endif if (fd->atomicity) { FPRINTF(stderr, "ROMIO cannot guarantee atomicity of noncontiguous accesses in atomic mode, as PIOFS doesn't support file locking. Use nonatomic mode and its associated semantics.\n"); MPI_Abort(MPI_COMM_WORLD, 1); } ADIOI_Datatype_iscontig(datatype, &buftype_is_contig); ADIOI_Datatype_iscontig(fd->filetype, &filetype_is_contig); MPI_Type_size_x(fd->filetype, &filetype_size); if ( ! filetype_size ) { #ifdef HAVE_STATUS_SET_BYTES MPIR_Status_set_bytes(status, datatype, 0); #endif *error_code = MPI_SUCCESS; return; } MPI_Type_get_extent(fd->filetype, &filetype_lb, &filetype_extent); MPI_Type_size_x(datatype, &buftype_size); MPI_Type_get_extent(datatype, &buftype_lb, &buftype_extent); etype_size = fd->etype_size; bufsize = buftype_size * count; if (!buftype_is_contig && filetype_is_contig) { /* noncontiguous in memory, contiguous in file. use writev */ flat_buf = ADIOI_Flatten_and_find(datatype); /* There is a limit of 16 on the number of iovecs for readv/writev! */ iov = (struct iovec *) ADIOI_Malloc(16*sizeof(struct iovec)); if (file_ptr_type == ADIO_EXPLICIT_OFFSET) { off = fd->disp + etype_size * offset; llseek(fd->fd_sys, off, SEEK_SET); } else off = llseek(fd->fd_sys, fd->fp_ind, SEEK_SET); k = 0; for (j=0; jcount; i++) { iov[k].iov_base = ((char *) buf) + j*buftype_extent + flat_buf->indices[i]; iov[k].iov_len = flat_buf->blocklens[i]; /*FPRINTF(stderr, "%d %d\n", iov[k].iov_base, iov[k].iov_len);*/ off += flat_buf->blocklens[i]; k = (k+1)%16; if (!k) { err = writev(fd->fd_sys, iov, 16); if (err == -1) err_flag = 1; } } if (k) { err = writev(fd->fd_sys, iov, k); if (err == -1) err_flag = 1; } if (file_ptr_type == ADIO_INDIVIDUAL) fd->fp_ind = off; ADIOI_Free(iov); if (err_flag) { #ifdef MPICH *error_code = MPIR_Err_create_code(MPI_SUCCESS, MPIR_ERR_RECOVERABLE, myname, __LINE__, MPI_ERR_IO, "**io", "**io %s", strerror(errno)); #elif defined(PRINT_ERR_MSG) *error_code = MPI_ERR_UNKNOWN; #else /* MPICH-1 */ *error_code = MPIR_Err_setmsg(MPI_ERR_IO, MPIR_ADIO_ERROR, myname, "I/O Error", "%s", strerror(errno)); ADIOI_Error(fd, *error_code, myname); #endif } else *error_code = MPI_SUCCESS; } /* if (!buftype_is_contig && filetype_is_contig) ... */ else { /* noncontiguous in file */ /* split up into several contiguous writes */ /* find starting location in the file */ /* filetype already flattened in ADIO_Open */ flat_file = ADIOI_Flatlist; while (flat_file->type != fd->filetype) flat_file = flat_file->next; disp = fd->disp; if (file_ptr_type == ADIO_INDIVIDUAL) { offset = fd->fp_ind; /* in bytes */ n_filetypes = -1; flag = 0; while (!flag) { n_filetypes++; for (i=0; icount; i++) { if (disp + flat_file->indices[i] + (ADIO_Offset) n_filetypes*filetype_extent + flat_file->blocklens[i] >= offset) { st_index = i; fwr_size = disp + flat_file->indices[i] + (ADIO_Offset) n_filetypes*filetype_extent + flat_file->blocklens[i] - offset; flag = 1; break; } } } } else { n_etypes_in_filetype = filetype_size/etype_size; n_filetypes = (int) (offset / n_etypes_in_filetype); etype_in_filetype = (int) (offset % n_etypes_in_filetype); size_in_filetype = etype_in_filetype * etype_size; sum = 0; for (i=0; icount; i++) { sum += flat_file->blocklens[i]; if (sum > size_in_filetype) { st_index = i; fwr_size = sum - size_in_filetype; abs_off_in_filetype = flat_file->indices[i] + size_in_filetype - (sum - flat_file->blocklens[i]); break; } } /* abs. offset in bytes in the file */ offset = disp + (ADIO_Offset) n_filetypes*filetype_extent + abs_off_in_filetype; } if (buftype_is_contig && !filetype_is_contig) { /* contiguous in memory, noncontiguous in file. should be the most common case. */ i = 0; j = st_index; off = offset; fwr_size = ADIOI_MIN(fwr_size, bufsize); while (i < bufsize) { if (fwr_size) { /* TYPE_UB and TYPE_LB can result in fwr_size = 0. save system call in such cases */ llseek(fd->fd_sys, off, SEEK_SET); err = write(fd->fd_sys, ((char *) buf) + i, fwr_size); if (err == -1) err_flag = 1; } i += fwr_size; if (off + fwr_size < disp + flat_file->indices[j] + flat_file->blocklens[j] + (ADIO_Offset) n_filetypes*filetype_extent) off += fwr_size; /* did not reach end of contiguous block in filetype. no more I/O needed. off is incremented by fwr_size. */ else { if (j < (flat_file->count - 1)) j++; else { j = 0; n_filetypes++; } off = disp + flat_file->indices[j] + (ADIO_Offset) n_filetypes*filetype_extent; fwr_size = ADIOI_MIN(flat_file->blocklens[j], bufsize-i); } } } else { /* noncontiguous in memory as well as in file */ flat_buf = ADIOI_Flatten_and_find(datatype); k = num = buf_count = 0; indx = flat_buf->indices[0]; j = st_index; off = offset; bwr_size = flat_buf->blocklens[0]; while (num < bufsize) { size = ADIOI_MIN(fwr_size, bwr_size); if (size) { llseek(fd->fd_sys, off, SEEK_SET); err = write(fd->fd_sys, ((char *) buf) + indx, size); if (err == -1) err_flag = 1; } new_fwr_size = fwr_size; new_bwr_size = bwr_size; if (size == fwr_size) { /* reached end of contiguous block in file */ if (j < (flat_file->count - 1)) j++; else { j = 0; n_filetypes++; } off = disp + flat_file->indices[j] + (ADIO_Offset) n_filetypes*filetype_extent; new_fwr_size = flat_file->blocklens[j]; if (size != bwr_size) { indx += size; new_bwr_size -= size; } } if (size == bwr_size) { /* reached end of contiguous block in memory */ k = (k + 1)%flat_buf->count; buf_count++; indx = buftype_extent*(buf_count/flat_buf->count) + flat_buf->indices[k]; new_bwr_size = flat_buf->blocklens[k]; if (size != fwr_size) { off += size; new_fwr_size -= size; } } num += size; fwr_size = new_fwr_size; bwr_size = new_bwr_size; } } if (file_ptr_type == ADIO_INDIVIDUAL) fd->fp_ind = off; if (err_flag) { #ifdef MPICH *error_code = MPIR_Err_create_code(MPI_SUCCESS, MPIR_ERR_RECOVERABLE, myname, __LINE__, MPI_ERR_IO, "**io", "**io %s", strerror(errno)); #elif defined(PRINT_ERR_MSG) *error_code = MPI_ERR_UNKNOWN; #else /* MPICH-1 */ *error_code = MPIR_Err_setmsg(MPI_ERR_IO, MPIR_ADIO_ERROR, myname, "I/O Error", "%s", strerror(errno)); ADIOI_Error(fd, *error_code, myname); #endif } else *error_code = MPI_SUCCESS; } fd->fp_sys_posn = -1; /* set it to null. */ #ifdef HAVE_STATUS_SET_BYTES MPIR_Status_set_bytes(status, datatype, bufsize); /* This is a temporary way of filling in status. The right way is to keep track of how much data was actually written by ADIOI_BUFFERED_WRITE. */ #endif if (!buftype_is_contig) ADIOI_Delete_flattened(datatype); }