#include #include #include #include "H5hut.h" #define PRINT_UPADJACENCIES 1 #define PRINT_DOWNADJACENCIES 0 const h5_oid_t MESH_TYPE = H5_TRIANGLE_MESH; const char* FNAME = "simple_triangle.h5"; static h5_err_t print_adjacencies_of_vertex ( h5t_mesh_t* const m, h5_loc_id_t local_id, clock_t* time_used ) { h5_loc_idlist_t* uadj_edges; h5_loc_idlist_t* uadj_triangles; clock_t time_used_before = clock(); H5FedGetAdjacencies (m, local_id, 1, &uadj_edges); H5FedGetAdjacencies (m, local_id, 2, &uadj_triangles); *time_used = clock() - time_used_before; int n = 0; if (uadj_triangles->num_items > n) n = uadj_triangles->num_items; if (uadj_edges->num_items > n) n = uadj_edges->num_items; int i; for (i = 0; i < n; i++) { char v[256]; char k[256]; char d[256]; h5_loc_id_t local_vids[4]; if (i == 0) { H5FedGetVertexIndicesOfEntity ( m, local_id, local_vids); snprintf (v, sizeof(v), "=[%lld]=", (long long)local_vids[0]); } else { *v = '\0'; } if (i < uadj_edges->num_items) { H5FedGetVertexIndicesOfEntity ( m, uadj_edges->items[i], local_vids); snprintf (k, sizeof(k), "=[%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1]); } else { *k = '\0'; } if (i < uadj_triangles->num_items) { H5FedGetVertexIndicesOfEntity ( m, uadj_triangles->items[i], local_vids); snprintf (d, sizeof(d), "=[%lld,%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1], (long long)local_vids[2]); } else { *d = '\0'; } printf ("| %-18s | %-18s | %-18s |\n", v, k, d); } H5FedReleaseListOfAdjacencies (m, &uadj_edges); H5FedReleaseListOfAdjacencies (m, &uadj_triangles); return H5_SUCCESS; } static h5_err_t print_adjacencies_of_edge ( h5t_mesh_t* const m, h5_loc_id_t local_id, clock_t* time_used ) { h5_loc_idlist_t* dadj_vertices; h5_loc_idlist_t* uadj_triangles; clock_t time_used_before = clock(); H5FedGetAdjacencies (m, local_id, 0, &dadj_vertices); H5FedGetAdjacencies (m, local_id, 2, &uadj_triangles); *time_used = clock() - time_used_before; int n = dadj_vertices->num_items; if (uadj_triangles->num_items > n) n = uadj_triangles->num_items; int i; for (i = 0; i < n; i++) { char v[256]; char k[256]; char d[256]; h5_loc_id_t local_vids[4]; if (i < dadj_vertices->num_items) { H5FedGetVertexIndicesOfEntity ( m, dadj_vertices->items[i], local_vids); snprintf (v, sizeof(v), "=[%lld]=", (long long)local_vids[0]); } else { *v = '\0'; } if (i == 0) { H5FedGetVertexIndicesOfEntity ( m, local_id, local_vids); snprintf (k, sizeof(k), "=[%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1]); } else { *k = '\0'; } if (i < uadj_triangles->num_items) { H5FedGetVertexIndicesOfEntity ( m, uadj_triangles->items[i], local_vids); snprintf (d, sizeof(d), "=[%lld,%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1], (long long)local_vids[2]); } else { *d = '\0'; } printf ("| %-18s | %-18s | %-18s |\n", v, k, d); } H5FedReleaseListOfAdjacencies (m, &dadj_vertices); H5FedReleaseListOfAdjacencies (m, &uadj_triangles); return H5_SUCCESS; } static h5_err_t print_adjacencies_of_elem ( h5t_mesh_t* const m, h5_loc_id_t local_id, clock_t* time_used ) { h5_loc_idlist_t* dadj_vertices; h5_loc_idlist_t* dadj_edges; clock_t time_used_before = clock(); H5FedGetAdjacencies (m, local_id, 0, &dadj_vertices); H5FedGetAdjacencies (m, local_id, 1, &dadj_edges); *time_used = clock() - time_used_before; int n = dadj_vertices->num_items; if (dadj_edges->num_items > n) n = dadj_edges->num_items; int i; for (i = 0; i < n; i++) { char v[256]; char k[256]; char d[256]; h5_loc_id_t local_vids[4]; if (i < dadj_vertices->num_items) { H5FedGetVertexIndicesOfEntity ( m, dadj_vertices->items[i], local_vids); snprintf (v, sizeof(v), "=[%lld]=", (long long)local_vids[0]); } else { *v = '\0'; } if (i < dadj_edges->num_items) { H5FedGetVertexIndicesOfEntity ( m, dadj_edges->items[i], local_vids); snprintf (k, sizeof(k), "=[%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1]); } else { *k = '\0'; } if (i == 0) { H5FedGetVertexIndicesOfEntity ( m, local_id, local_vids); snprintf (d, sizeof(k), "=[%lld,%lld,%lld]=", (long long)local_vids[0], (long long)local_vids[1], (long long)local_vids[2]); } else { *d = '\0'; } printf ( "| %-18s | %-18s | %-18s |\n", v, k, d ); } H5FedReleaseListOfAdjacencies (m, &dadj_vertices); H5FedReleaseListOfAdjacencies (m, &dadj_edges); return H5_SUCCESS; } static h5_err_t traverse_vertices ( h5t_mesh_t* const m ) { h5_loc_id_t local_id; h5_loc_idx_t num = 0; clock_t t_total = 0; clock_t t_min = CLOCKS_PER_SEC; clock_t t_max = 0; clock_t t = 0; printf ("\nAdjacencies to vertices\n"); h5t_iterator_t* iter = H5FedBeginTraverseEntities (m, 2); while ((local_id = H5FedTraverseEntities (iter)) >= 0) { print_adjacencies_of_vertex (m, local_id, &t); num++; t_total += t; if (t < t_min) t_min = t; if (t > t_max) t_max = t; } fprintf ( stderr, "%lld\ttotal: %f\tmin: %f\tavg: %f\tmax: %f\n", (long long)num, (double)t_total / (double)CLOCKS_PER_SEC, (double)t_min / (double)CLOCKS_PER_SEC, (double)t_total / (double)CLOCKS_PER_SEC / (double)num, (double)t_max / (double)CLOCKS_PER_SEC ); return H5FedEndTraverseEntities (iter); } static h5_err_t traverse_edges ( h5t_mesh_t* const m ) { h5_loc_id_t local_id; h5_loc_idx_t num = 0; clock_t t_total = 0; clock_t t_min = CLOCKS_PER_SEC; clock_t t_max = 0; clock_t t = 0; printf ("\nAdjacencies to edges\n"); h5t_iterator_t* iter = H5FedBeginTraverseEntities (m, 1); while ((local_id = H5FedTraverseEntities (iter)) >= 0) { print_adjacencies_of_edge (m, local_id, &t); num++; t_total += t; if (t < t_min) t_min = t; if (t > t_max) t_max = t; } fprintf ( stderr, "%lld\ttotal: %f\tmin: %f\tavg: %f\tmax: %f\n", (long long)num, (double)t_total / (double)CLOCKS_PER_SEC, (double)t_min / (double)CLOCKS_PER_SEC, (double)t_total / (double)CLOCKS_PER_SEC / (double)num, (double)t_max / (double)CLOCKS_PER_SEC ); return H5FedEndTraverseEntities (iter); } static h5_err_t traverse_elems ( h5t_mesh_t* const m ) { h5_loc_id_t local_id; h5_loc_idx_t num = 0; clock_t t_total = 0; clock_t t_min = CLOCKS_PER_SEC; clock_t t_max = 0; clock_t t = 0; printf ("\nAdjacencies to tetrahedra\n"); h5t_iterator_t* iter = H5FedBeginTraverseEntities (m, 0); while ((local_id = H5FedTraverseEntities (iter)) >= 0) { print_adjacencies_of_elem (m, local_id, &t); num++; t_total += t; if (t < t_min) t_min = t; if (t > t_max) t_max = t; } fprintf ( stderr, "%lld\ttotal: %f\tmin: %f\tavg: %f\tmax: %f\n", (long long)num, (double)t_total / (double)CLOCKS_PER_SEC, (double)t_min / (double)CLOCKS_PER_SEC, (double)t_total / (double)CLOCKS_PER_SEC / (double)num, (double)t_max / (double)CLOCKS_PER_SEC); return H5FedEndTraverseEntities (iter); } static h5_err_t traverse_level ( h5t_mesh_t* const m, const h5t_lvl_idx_t level_id ) { printf (" Setting level to %d\n", level_id); H5FedSetLevel (m, level_id); traverse_vertices (m); traverse_edges (m); traverse_elems (m); return H5_SUCCESS; } static h5_err_t traverse_mesh ( h5_file_t* const f, const h5_id_t mesh_id ) { h5t_mesh_t* m; /* open mesh and get number of levels */ printf (" Opening mesh with id %lld\n", mesh_id); H5FedOpenTriangleMeshByIndex (f, mesh_id, &m); h5_size_t num_levels = H5FedGetNumLevels (m); printf (" Number of levels in mesh: %lld\n", (long long)num_levels); /* loop over all levels */ h5t_lvl_idx_t level_id; for (level_id = 0; level_id < num_levels; level_id++) { traverse_level (m, level_id); } /* done */ H5FedCloseMesh (m); return H5_SUCCESS; } int main ( int argc, char* argv[] ) { /* abort program on error, so we don't have to handle them */ H5SetErrorHandler (H5AbortErrorhandler); H5SetVerbosityLevel (2); /* open file and get number of meshes */ h5_file_t *f = H5OpenFile (FNAME, H5_O_RDONLY, 0); h5_size_t num_meshes = H5FedGetNumTriangleMeshes (f); printf (" Number of meshes: %lld\n", (long long)num_meshes); /* loop over all meshes */ h5_id_t mesh_id; for (mesh_id = 0; mesh_id < num_meshes; mesh_id++) { traverse_mesh (f, mesh_id); } /* done */ H5CloseFile (f); return 0; }