#include #include #include #include #include "H5Part.h" #include "H5Block.h" #define NPROCS 8 struct H5BlockPartition { h5_int64_t i_start; h5_int64_t i_end; h5_int64_t j_start; h5_int64_t j_end; h5_int64_t k_start; h5_int64_t k_end; }; struct H5BlockPartition Layout1[1] = { { 0, 63, 0, 63, 0, 511 } }; struct H5BlockPartition Layout8[8] = { { 0,63, 0,63, 0, 63}, { 0,63, 0,63, 64,127}, { 0,63, 0,63, 128,191}, { 0,63, 0,63, 192,255}, { 0,63, 0,63, 256,319}, { 0,63, 0,63, 320,383}, { 0,63, 0,63, 384,447}, { 0,63, 0,63, 448,511} }; struct H5BlockPartition Layout8G[8] = { { 0,63, 0,63, 0, 64}, { 0,63, 0,63, 63,128}, { 0,63, 0,63, 127,192}, { 0,63, 0,63, 191,256}, { 0,63, 0,63, 255,320}, { 0,63, 0,63, 319,384}, { 0,63, 0,63, 383,448}, { 0,63, 0,63, 447,511} }; struct H5BlockPartition Layout16[16] = { { 0,63, 0,31, 0, 63}, { 0,63, 32,63, 0, 63}, { 0,63, 0,31, 64,127}, { 0,63, 32,63, 64,127}, { 0,63, 0,31, 128,191}, { 0,63, 32,63, 128,191}, { 0,63, 0,31, 192,255}, { 0,63, 32,63, 192,255}, { 0,63, 0,31, 256,319}, { 0,63, 32,63, 256,319}, { 0,63, 0,31, 320,383}, { 0,63, 32,63, 320,383}, { 0,63, 0,31, 384,447}, { 0,63, 32,63, 384,447}, { 0,63, 0,31, 448,511}, { 0,63, 32,63, 448,511} }; struct H5BlockPartition Layout16G[16] = { { 0,63, 0,32, 0, 64}, { 0,63, 31,63, 0, 64}, { 0,63, 0,32, 63,128}, { 0,63, 31,63, 63,128}, { 0,63, 0,32, 127,192}, { 0,63, 31,63, 127,192}, { 0,63, 0,32, 191,256}, { 0,63, 31,63, 191,256}, { 0,63, 0,32, 255,320}, { 0,63, 31,63, 255,320}, { 0,63, 0,32, 319,384}, { 0,63, 31,63, 319,384}, { 0,63, 0,32, 383,448}, { 0,63, 31,63, 383,448}, { 0,63, 0,32, 447,511}, { 0,63, 31,63, 447,511} }; struct H5BlockPartition Layout32[32] = { { 0,31, 0,31, 0, 63}, { 0,31, 32,63, 0, 63}, { 32,63, 0,31, 0, 63}, { 32,63, 32,63, 0, 63}, { 0,31, 0,31, 64,127}, { 0,31, 32,63, 64,127}, { 32,63, 0,31, 64,127}, { 32,63, 32,63, 64,127}, { 0,31, 0,31, 128,191}, { 0,31, 32,63, 128,191}, { 32,63, 0,31, 128,191}, { 32,63, 32,63, 128,191}, { 0,31, 0,31, 192,255}, { 0,31, 32,63, 192,255}, { 32,63, 0,31, 192,255}, { 32,63, 32,63, 192,255}, { 0,31, 0,31, 256,319}, { 0,31, 32,63, 256,319}, { 32,63, 0,31, 256,319}, { 32,63, 32,63, 256,319}, { 0,31, 0,31, 320,383}, { 0,31, 32,63, 320,383}, { 32,63, 0,31, 320,383}, { 32,63, 32,63, 320,383}, { 0,31, 0,31, 384,447}, { 0,31, 32,63, 384,447}, { 32,63, 0,31, 384,447}, { 32,63, 32,63, 384,447}, { 0,31, 0,31, 448,511}, { 0,31, 32,63, 448,511}, { 32,63, 0,31, 448,511}, { 32,63, 32,63, 448,511} }; struct H5BlockPartition Layout32G[32] = { { 0,32, 0,32, 0, 64}, { 0,32, 31,63, 0, 64}, { 31,63, 0,32, 0, 64}, { 31,63, 31,63, 0, 64}, { 0,32, 0,32, 63,128}, { 0,32, 31,63, 63,128}, { 31,63, 0,32, 63,128}, { 31,63, 31,63, 63,128}, { 0,32, 0,32, 127,192}, { 0,32, 31,63, 127,192}, { 31,63, 0,32, 127,192}, { 31,63, 31,63, 127,192}, { 0,32, 0,32, 191,256}, { 0,32, 31,63, 191,256}, { 31,63, 0,32, 191,256}, { 31,63, 31,63, 191,256}, { 0,32, 0,32, 255,320}, { 0,32, 31,63, 255,320}, { 31,63, 0,32, 255,320}, { 31,63, 31,63, 255,320}, { 0,32, 0,32, 319,384}, { 0,32, 31,63, 319,384}, { 31,63, 0,32, 319,384}, { 31,63, 31,63, 319,384}, { 0,31, 0,31, 383,448}, { 0,31, 31,63, 383,448}, { 31,63, 0,31, 383,448}, { 31,63, 31,63, 383,448}, { 0,32, 0,32, 447,511}, { 0,32, 31,63, 447,511}, { 31,63, 0,32, 447,511}, { 31,63, 31,63, 447,511} }; #if 0 static h5_int64_t _calc_index_KJI ( int myproc, h5_int64_t i, h5_int64_t i_dims, h5_int64_t j, h5_int64_t j_dims, h5_int64_t k, h5_int64_t k_dims ) { return i + j*i_dims + k*i_dims*j_dims; } #endif #define _calc_index( i, i_dims, j, j_dims, k, k_dims ) \ (i + j*i_dims + k*i_dims*j_dims) static h5_int64_t _write_data ( h5_file_t *f, int myproc, struct H5BlockPartition *layout ) { h5_int64_t i, j, k, idx; h5_int64_t herr; h5_float64_t *data; h5_int64_t i_dims = layout->i_end - layout->i_start + 1; h5_int64_t j_dims = layout->j_end - layout->j_start + 1; h5_int64_t k_dims = layout->k_end - layout->k_start + 1; printf ( "Writing Step #%lld\n", (long long)f->step_idx ); data = malloc ( i_dims * j_dims * k_dims * sizeof ( *data ) ); for ( i = 0; i < i_dims; i++ ) { for ( j = 0; j < j_dims; j++ ) { for ( k = 0; k < k_dims; k++ ) { idx = _calc_index ( i, i_dims, j, j_dims, k, k_dims ); *(data + idx) = k + 1000*j + 100000*i + 10000000*myproc; } } } herr = H5BlockDefine3DFieldLayout ( f, layout->i_start, layout->i_end, layout->j_start, layout->j_end, layout->k_start, layout->k_end ); if ( herr < 0 ) return herr; herr = H5Block3dWriteScalarFieldFloat64 ( f, "TestField", data ); if ( herr < 0 ) return herr; free ( data ); return 1; } static h5_int64_t _write_file ( const char *fname, const int myproc, MPI_Comm comm, struct H5BlockPartition *layout ) { h5_file_t *f; h5_int64_t timestep = 0; h5_int64_t herr; printf ("PROC[%d]: Open file \"%s\" for writing ...\n", myproc, fname ); f = H5PartOpenFileParallel ( fname, H5PART_WRITE, comm ); if ( f == NULL ) return -1; herr = H5PartSetStep ( f, timestep ); if ( herr < 0 ) return herr; if ( _write_data ( f, myproc, layout ) < 0 ) { printf ("Failed to write file \"%s\"\n", fname ); return 2; } herr = H5PartCloseFile ( f ); if ( herr < 0 ) return -1; return 0; } static h5_int64_t _read_data ( h5_file_t *f, int myproc, struct H5BlockPartition *layout ) { h5_int64_t i, j, k, idx; h5_int64_t herr; h5_float64_t *data; h5_int64_t i_dims = layout->i_end - layout->i_start + 1; h5_int64_t j_dims = layout->j_end - layout->j_start + 1; h5_int64_t k_dims = layout->k_end - layout->k_start + 1; printf ( "Reading Step #%lld\n", (long long)f->step_idx ); data = malloc ( i_dims * j_dims * k_dims * sizeof ( *data ) ); herr = H5BlockDefine3DFieldLayout ( f, layout->i_start, layout->i_end, layout->j_start, layout->j_end, layout->k_start, layout->k_end ); if ( herr < 0 ) return herr; herr = H5Block3dReadScalarFieldFloat64 ( f, "TestField", data ); if ( herr < 0 ) return herr; for ( i = 0; i < i_dims; i++ ) { for ( j = 0; j < j_dims; j++ ) { for ( k = 0; k < k_dims; k++ ) { idx = _calc_index ( i, i_dims, j, j_dims, k, k_dims ); /* what do I need to calculate the value? proc which has the item written i, j, k relative to proc */ h5_int64_t ri = i + layout->i_start; h5_int64_t rj = j + layout->j_start; h5_int64_t rk = k + layout->k_start; int proc = (int) H5Block3dGetProcOf ( f, ri, rj, rk ); h5_size_t i_start, i_end; h5_size_t j_start, j_end; h5_size_t k_start, k_end; H5Block3dGetPartitionOfProc ( f, proc, &i_start, &i_end, &j_start, &j_end, &k_start, &k_end ); ri -= i_start; rj -= j_start; rk -= k_start; h5_float64_t value = rk + 1000*rj + 100000*ri + 10000000*proc; if ( *(data + idx) != value ) { printf ( "PROC[%d]: " "value missmatch for (%lld,%lld,%lld); is: %f;" " should be: %f\n", myproc, (long long)i, (long long)j, (long long)k, *( data + idx ), value ); printf ( "PROC[%d]: " "My partition is: " "%lld:%lld, %lld:%lld, %lld:%lld\n", myproc, (long long)layout->i_start, (long long)layout->i_end, (long long)layout->j_start, (long long)layout->j_end, (long long)layout->k_start, (long long)layout->k_end ); printf ( "PROC[%d]: " "Value has been written by proc %d\n", myproc, proc ); printf ( "PROC[%d]: " "The partition for this proc was: " "%lld:%lld, %lld:%lld, %lld:%lld\n", myproc, (long long)i_start, (long long)i_end, (long long)j_start, (long long)j_end, (long long)k_start, (long long)k_end ); return -1; } } } } free ( data ); return 0; } static h5_int64_t _read_file ( const char *fname, const int myproc, MPI_Comm comm, struct H5BlockPartition *layout ) { h5_file_t *f; h5_int64_t timestep = 0; h5_int64_t herr; printf ("PROC[%d]: Open file \"%s\" for reading ...\n", myproc, fname ); f = H5PartOpenFileParallel ( fname, H5PART_READ, comm ); if ( f == NULL ) return -1; herr = H5PartSetStep ( f, timestep ); if ( herr < 0 ) return herr; if ( _read_data ( f, myproc, layout ) < 0 ) { printf ("Failed to read file \"%s\"\n", fname ); return 2; } herr = H5PartCloseFile ( f ); if ( herr < 0 ) return -1; return 0; } int main ( int argc, char **argv ) { char *fname; int myproc; int nprocs; int opt_with_ghosts = 0; int opt_read = 0; int opt_write = 0; struct H5BlockPartition *layout; MPI_Comm comm = MPI_COMM_WORLD; MPI_Init( &argc, &argv ); MPI_Comm_size ( comm, &nprocs ); MPI_Comm_rank( comm, &myproc ); while ( --argc ) { if ( strcmp ( argv[argc], "-r" ) == 0 ) opt_read = 1; else if ( strcmp ( argv[argc], "-w" ) == 0 ) opt_write = 1; else if ( strcmp ( argv[argc], "-g" ) == 0 ) opt_with_ghosts = 1; else { fprintf ( stderr, "Illegal option %s\n\n" "Usage: %s -w -r -g\n", argv[argc], argv[0] ); return 1; } } switch ( nprocs ) { case 1: fname = "blockfile1.h5"; layout = &Layout1[myproc]; break; case 8: if ( opt_with_ghosts ) { fname = "blockfile8G.h5"; layout = &Layout8G[myproc]; } else { fname = "blockfile8.h5"; layout = &Layout8[myproc]; } break; case 16: if ( opt_with_ghosts ) { fname = "blockfile16G.h5"; layout = &Layout16G[myproc]; } else { fname = "blockfile16.h5"; layout = &Layout16[myproc]; } break; case 32: if ( opt_with_ghosts ) { fname = "blockfile32G.h5"; layout = &Layout32G[myproc]; } else { fname = "blockfile32.h5"; layout = &Layout32[myproc]; } break; default: printf ( "Run this test on %d processor(s)!\n", NPROCS ); return 1; } H5SetVerbosityLevel ( 4 ); if ( opt_write ) { if ( _write_file ( fname, myproc, comm, layout ) < 0 ) { printf ("Failed to write file \"%s\"\n", fname ); } } else if ( opt_read ) { if ( _read_file ( fname, myproc, comm, layout ) < 0 ) { printf ("Failed to read file \"%s\"\n", fname ); } } MPI_Finalize(); return 0; }