/* COPYRIGHT The following is a notice of limited availability of the code, and disclaimer which must be included in the prologue of the code and in all source listings of the code. (C) COPYRIGHT 2008 University of Chicago Permission is hereby granted to use, reproduce, prepare derivative works, and to redistribute to others. This software was authored by: D. Levine Mathematics and Computer Science Division Argonne National Laboratory Group with programming assistance of participants in Argonne National Laboratory's SERS program. GOVERNMENT LICENSE Portions of this material resulted from work developed under a U.S. Government Contract and are subject to the following license: the Government is granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable worldwide license in this computer software to reproduce, prepare derivative works, and perform publicly and display publicly. DISCLAIMER This computer code material was prepared, in part, as an account of work sponsored by an agency of the United States Government. Neither the United States, nor the University of Chicago, nor any of their employees, makes any warranty express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. */ /***************************************************************************** * FILE: select.c: This file contains the routines that have to do with * selection * * Authors: David M. Levine, Philip L. Hallstrom, David M. Noelle, * Brian P. Walenz *****************************************************************************/ #include "pgapack.h" /*U**************************************************************************** PGASelect - performs genetic algorithm selection using either the default selection scheme or that specified with PGASetSelectType(). Valid selection methods are proportional, stochastic universal, tournament, or probabilistic tournament selection, PGA_SELECT_PROPORTIONAL, PGA_SELECT_SUS, PGA_SELECT_TOURNAMENT, and PGA_SELECT_PTOURNAMENT, respectively. This function updates an internal array with the indices of members of popix selected for recombination. These indices may be accessed with PGASelectNextIndex() Category: Operators Inputs: ctx - context variable popix - symbolic constant of population to select from Outputs: An array used by PGASelectNextIndex() is created which contains the population indices of the selected individuals. Example: PGAContext *ctx, : PGASelect(ctx, PGA_OLDPOP); ****************************************************************************U*/ void PGASelect( PGAContext *ctx, int popix ) { int i; /* not to intefere with dummy argument */ int j; /* random number */ int temp; /* for shuffling selected indices US */ PGAIndividual *pop; /* pointer to appropriate population */ PGADebugEntered("PGASelect"); pop = PGAGetIndividual(ctx, 0, popix); switch (ctx->ga.SelectType) { case PGA_SELECT_PROPORTIONAL: /* proportional selection */ for (i=0; iga.PopSize; i++) ctx->ga.selected[i] = PGASelectProportional( ctx, pop ); break; case PGA_SELECT_SUS: /* stochastic universal selection */ PGASelectSUS( ctx, pop ); break; case PGA_SELECT_TOURNAMENT: /* tournament selection */ for (i=0; iga.PopSize; i++) ctx->ga.selected[i] = PGASelectTournament( ctx, pop ); break; case PGA_SELECT_PTOURNAMENT: /* probabilistic tournament selection */ for (i=0; iga.PopSize; i++) ctx->ga.selected[i] = PGASelectPTournament( ctx, pop ); break; default: PGAError( ctx, "PGASelect: Invalid value of SelectType:", PGA_FATAL, PGA_INT, (void *) &(ctx->ga.SelectType) ); break; } /* randomize selected string locations */ for (i=0; iga.PopSize; i++) { j = PGARandomInterval(ctx, 0,ctx->ga.PopSize-1); temp = ctx->ga.selected[j]; ctx->ga.selected[j] = ctx->ga.selected[i]; ctx->ga.selected[i] = temp; } PGADebugExited("PGASelect"); } /*U**************************************************************************** PGASelectNextIndex - returns the index of next individual in internal array that contains the indices determined by PGASelect Category: Operators Inputs: ctx - context variable Outputs: A population index for the next selected creature. Example: PGAContext *ctx; int l; : l = PGASelectNextIndex(ctx, PGA_OLDPOP); ****************************************************************************U*/ int PGASelectNextIndex ( PGAContext *ctx ) { PGADebugEntered("PGASelectNextIndex"); if (ctx->ga.SelectIndex < ctx->ga.PopSize) { PGADebugExited("PGASelectNextIndex"); return(ctx->ga.selected[ctx->ga.SelectIndex++]); } /* Oops. We never found the index. Fatal error. (return is here * so that compilers will be quiet.) */ PGAError( ctx, "PGASelectNextIndex: SelectIndex >= ctx->ga.PopSize", PGA_FATAL, PGA_INT, (void *) &ctx->ga.SelectIndex ); return(0); } /*U**************************************************************************** PGASetSelectType - specify the type of selection to use. Valid choices are PGA_SELECT_PROPORTIONAL, PGA_SELECT_SUS, PGA_SELECT_TOURNAMENT, and PGA_SELECT_PTOURNAMENT for proportional, stochastic universal selection, tournament, and probabilistic tournament selection, respectively. The default is PGA_SELECT_TOURNAMENT. Category: Operators Inputs: ctx - context variable select_type - symbolic constant to specify selection type Outputs: None Example: PGAContext *ctx; : PGASetSelectType(ctx, PGA_SELECT_SUS); ****************************************************************************U*/ void PGASetSelectType( PGAContext *ctx, int select_type) { PGADebugEntered("PGASetSelectType"); switch (select_type) { case PGA_SELECT_PROPORTIONAL: case PGA_SELECT_SUS: case PGA_SELECT_TOURNAMENT: case PGA_SELECT_PTOURNAMENT: ctx->ga.SelectType = select_type; break; default: PGAError ( ctx, "PGASetSelectType: Invalid value of select_type:", PGA_FATAL, PGA_INT, (void *) &select_type); break; } PGADebugExited("PGASetSelectType"); } /*U*************************************************************************** PGAGetSelectType - Returns the type of selection selected Category: Operators Inputs: ctx - context variable Outputs: Returns the integer corresponding to the symbolic constant used to specify the type of selection specified Example: PGAContext *ctx; int selecttype; : selecttype = PGAGetSelectType(ctx); switch (selecttype) { case PGA_SELECT_PROPORTIONAL: printf("Selection Type = PGA_SELECT_PROPORTIONAL\n"); break; case PGA_SELECT_SUS: printf("Selection Type = PGA_SELECT_SUS\n"); break; case PGA_SELECT_TOURNAMENT: printf("Selection Type = PGA_SELECT_TOURNAMENT\n"); break; case PGA_SELECT_PTOURNAMENT: printf("Selection Type = PGA_SELECT_PTOURNAMENT\n"); break; } ***************************************************************************U*/ int PGAGetSelectType (PGAContext *ctx) { PGADebugEntered("PGAGetSelectType"); PGAFailIfNotSetUp("PGAGetSelectType"); PGADebugExited("PGAGetSelectType"); return(ctx->ga.SelectType); } /*U**************************************************************************** PGASetPTournamentProb - Specifies the probability that the string that wins a binary tournament will be selected. This function will have no effect unless PGA_SELECT_PTOURNAMENT was specified as the type of selection to use with PGASetSelectType. The default value is 0.6. Category: Operators Inputs: ctx - context variable p - the probability of selecting the better string Outputs: None Example: PGAContext *ctx; : PGASetPTournamentProb(ctx,0.8); ****************************************************************************U*/ void PGASetPTournamentProb(PGAContext *ctx, double ptournament_prob) { PGADebugEntered("PGASetPTournamentProb"); ctx->ga.PTournamentProb = ptournament_prob; PGADebugExited("PGASetPTournamentProb"); } /*U*************************************************************************** PGAGetPTournamentProb - returns the probability of selecting the best string in a probabilistic binary tournament Category: Operators Inputs: ctx - context variable Outputs: The probabilistic binary tournament selection probability Example: PGAContext *ctx; double pt; : pt = PGAGetPTournamentProb(ctx); ***************************************************************************U*/ double PGAGetPTournamentProb(PGAContext *ctx) { PGADebugEntered("PGAGetPTournamentProb"); PGAFailIfNotSetUp("PGAGetPTournamentProb"); PGADebugExited("PGAGetPTournamentProb"); return ctx->ga.PTournamentProb; } /*I**************************************************************************** PGASelectProportional - selects a parent for the next generation using a linear search through a (fitness) weighted ``roulette wheel''. The probability of selection is given by p_i = f_i/sum(i)f_i Ref: D. Goldberg, Genetic Algorithms, pg. Inputs: ctx - context variable popix - symbolic constant of population to select from Outputs: index of the selected string Example: PGAContext *ctx, int l; : l = PGASelectProportional(ctx, PGA_OLDPOP); ****************************************************************************I*/ int PGASelectProportional(PGAContext *ctx, PGAIndividual *pop) { double sum, sumfitness, r; int i; PGADebugEntered("PGASelectProportional"); sumfitness = 0.0; for (i=0; iga.PopSize; i++) sumfitness += (pop+i)->fitness; i = 0; sum = (pop+i)->fitness; r = sumfitness * PGARandom01(ctx, 0); while(r > sum || i==ctx->ga.PopSize) { i++; sum += (pop+i)->fitness; } PGADebugExited("PGASelectProportional"); return(i); } /*I**************************************************************************** PGASelectSUS - A select routine using stochastic universal sampling Ref: J. Baker, Reducing Bias and Inefficiency in the Selection Algorithm. Second GA conference, pp 14-21 (page 16) Inputs: ctx - context variable popix - symbolic constant of population to select from Outputs: the array ga.selected[] created via side effect. I.e., this routine creates the entire selected population with one call Example: PGAContext *ctx, : PGASelectSUS(ctx, PGA_OLDPOP); ****************************************************************************I*/ void PGASelectSUS( PGAContext *ctx, PGAIndividual *pop ) { int i; int k; /* index to fill samples array */ double davg; /* population average fitness */ double sum; /* running sum of expected values */ double r; /* random number */ PGADebugEntered("PGASelectSUS"); /* fill the expected value array */ davg = 0.0; for(i=0;iga.PopSize;i++) davg += (pop+i)->fitness; davg /= (double) ctx->ga.PopSize; for(i=0;iga.PopSize;i++) ctx->scratch.dblscratch[i] = (pop+i)->fitness / davg; /* select ctx->ga.PopSize as follows */ sum = 0; k = 0; r = PGARandom01(ctx, 0); for(i=0;iga.PopSize;i++) for( sum+=ctx->scratch.dblscratch[i]; sum>r; r++ ) ctx->ga.selected[k++] = i; PGADebugExited("PGASelectSUS"); } /*I**************************************************************************** PGASelectTournament - chooses two strings randomly and returns the one with higher fitness Ref: D. Goldberg, Genetic Algorithms, pg. 121 Inputs: ctx - context variable popix - symbolic constant of population to select from Outputs: index of the selected string Example: PGAContext *ctx, int l; : l = PGASelectTournament(ctx, PGA_OLDPOP); ****************************************************************************I*/ int PGASelectTournament( PGAContext *ctx, PGAIndividual *pop ) { int m1, m2; PGADebugEntered("PGASelectTournament"); m1 = PGARandomInterval(ctx, 0, ctx->ga.PopSize-1); m2 = PGARandomInterval(ctx, 0, ctx->ga.PopSize-1); PGADebugExited("PGASelectTournament"); return( ((pop+m1)->fitness > (pop+m2)->fitness) ? m1 : m2); } /*I**************************************************************************** PGASelectPTournament - chooses two strings randomly and returns the one with higher fitness with a specified probability Ref: D. Goldberg, Genetic Algorithms, pg. 121 Inputs: ctx - context variable popix - symbolic constant of population to select from Outputs: index of the selected string Example: PGAContext *ctx, int l; : l = PGASelectPTournament(ctx, PGA_OLDPOP); ****************************************************************************I*/ int PGASelectPTournament( PGAContext *ctx, PGAIndividual *pop ) { int m1, m2; int RetVal; PGADebugEntered("PGASelectPTournament"); m1 = PGARandomInterval(ctx, 0, ctx->ga.PopSize-1); m2 = PGARandomInterval(ctx, 0, ctx->ga.PopSize-1); if ( (pop+m1)->fitness > (pop+m2)->fitness ) if ( (double) PGARandom01(ctx, 0) < ctx->ga.PTournamentProb ) RetVal = m1; else RetVal = m2; else if ( (double) PGARandom01(ctx, 0) < ctx->ga.PTournamentProb ) RetVal = m2; else RetVal = m1; PGADebugExited("PGASelectPTournament"); return(RetVal); }