/* COPYRIGHT The following is a notice of limited availability of the code, and disclaimer which must be included in the prologue of the code and in all source listings of the code. (C) COPYRIGHT 2008 University of Chicago Permission is hereby granted to use, reproduce, prepare derivative works, and to redistribute to others. This software was authored by: D. Levine Mathematics and Computer Science Division Argonne National Laboratory Group with programming assistance of participants in Argonne National Laboratory's SERS program. GOVERNMENT LICENSE Portions of this material resulted from work developed under a U.S. Government Contract and are subject to the following license: the Government is granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable worldwide license in this computer software to reproduce, prepare derivative works, and perform publicly and display publicly. DISCLAIMER This computer code material was prepared, in part, as an account of work sponsored by an agency of the United States Government. Neither the United States, nor the University of Chicago, nor any of their employees, makes any warranty express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. */ /***************************************************************************** * FILE: restart.c: This file contains the routines needed to handle * the restart operator, and restarting the GA. * * Authors: David M. Levine, Philip L. Hallstrom, David M. Noelle, * Brian P. Walenz *****************************************************************************/ #include "pgapack.h" /*U**************************************************************************** PGARestart - reseeds a population from the best string Category: Operators Inputs: val - the probability of changing an allele when copying the best string to the new population source_pop - the source population dest_pop - symbolic constant of the destination population Outputs: dest_pop is modified by side-effect. Example: Perform an unspecified test to determine if the current evolution is not evolving fast enough, and if so, restart the evolution. PGAContext *ctx; PGAEvaluateMS(ctx, PGA_OLDPOP, f, comm); PGAFitness (ctx, PGA_OLDPOP); } : if (StagnantEvolution()) { PGARestart(ctx, PGA_OLDPOP, PGA_NEWPOP); PGAEvaluate(ctx, PGA_NEWPOP, EvalFunc); PGAUpdateGeneration(ctx); } ****************************************************************************U*/ void PGARestart(PGAContext *ctx, int source_pop, int dest_pop) { /* For integers and reals, the amount by which to change is set with PGASetMutationIntegerValue and PGASetMutationRealValue, respectively. For binary strings, the bits are complemented. */ int dest_p, old_mut_type, source_p; double val; PGADebugEntered("PGARestart"); printf("Restarting the algorithm . . . \n"); fflush(stdout); source_p = PGAGetBestIndex(ctx, source_pop); if (source_p != 0 || source_pop != dest_pop) PGACopyIndividual(ctx, source_p, source_pop, 0, dest_pop); PGASetEvaluationUpToDateFlag(ctx, 0, dest_pop, PGA_FALSE); old_mut_type = PGAGetMutationType(ctx); ctx->ga.MutationType = PGA_MUTATION_UNIFORM; val = ctx->ga.restartAlleleProb; if (ctx->fops.Mutation) { for (dest_p = 2; dest_p <= ctx->ga.PopSize; dest_p++) { PGACopyIndividual(ctx, 0, dest_pop, dest_p-1, dest_pop); (*ctx->fops.Mutation)(&ctx, &dest_p, &dest_pop, &val); PGASetEvaluationUpToDateFlag(ctx, dest_p-1, dest_pop, PGA_FALSE); } } else { for (dest_p = 1; dest_p < ctx->ga.PopSize; dest_p++) { PGACopyIndividual(ctx, 0, dest_pop, dest_p, dest_pop); (*ctx->cops.Mutation)(ctx, dest_p, dest_pop, val); PGASetEvaluationUpToDateFlag(ctx, dest_p, dest_pop, PGA_FALSE); } } ctx->ga.MutationType = old_mut_type; PGADebugExited("PGARestart"); } /*U**************************************************************************** PGASetRestartFlag - specifies whether the algorithm should employ the restart operator Category: Operators Inputs: ctx - context variable val - boolean variable Outputs: None Example: PGAContext *ctx; : PGASetRestartFlag(ctx, PGA_TRUE); ****************************************************************************U*/ void PGASetRestartFlag(PGAContext *ctx, int val) { PGADebugEntered("PGASetRestartFlag"); switch (val) { case PGA_TRUE: case PGA_FALSE: ctx->ga.restart = val; break; default: PGAError(ctx, "PGASetRestartFlag: Invalid value for restart:", PGA_FATAL, PGA_INT, (void *) &val); break; } PGADebugExited("PGASetRestartFlag"); } /*U**************************************************************************** PGAGetRestartFlag - returns whether the algorithm should employ the restart operator Category: Operators Inputs: ctx - context variable Outputs: PGA_TRUE if restarting is enabled, otherwise PGA_FALSE. Example: PGAContext *ctx; int val; : val = PGAGetRestartFlag(ctx); ****************************************************************************U*/ int PGAGetRestartFlag(PGAContext *ctx) { PGADebugEntered("PGAGetRestartFlag"); PGAFailIfNotSetUp("PGAGetRestartFlag"); PGADebugExited("PGAGetRestartFlag"); return (ctx->ga.restart); } /*U**************************************************************************** PGASetRestartFrequencyValue - specifies the number of iterations of no change in the best string after which the algorithm should restart Category: Operators Inputs: ctx - context variable numiter - number of changeless iterations Outputs: None Example: PGAContext *ctx; : PGASetRestartFrequencyValue(ctx, 100); ****************************************************************************U*/ void PGASetRestartFrequencyValue(PGAContext *ctx, int numiter) { PGADebugEntered("PGASetRestartFrequencyValue"); if (numiter > 0) ctx->ga.restartFreq = numiter; else PGAError(ctx, "PGASetRestartFrequencyValue: Invalid value for " "restart freqency:", PGA_FATAL, PGA_INT, (void *) &numiter); PGADebugExited("PGASetRestartFrequencyValue"); } /*U**************************************************************************** PGAGetRestartFrequencyValue - returns the number of iterations of no change in the best string after which the algorithm should restart Category: Operators Inputs: ctx - context variable numiter - number of changeless iterations Outputs: The number of iteration of no change required for a restart. Example: PGAContext *ctx; : numiter = PGAGetRestartFrequencyValue(ctx); ****************************************************************************U*/ int PGAGetRestartFrequencyValue(PGAContext *ctx) { PGADebugEntered("PGAGetRestartFrequencyValue"); PGAFailIfNotSetUp("PGAGetRestartFrequencyValue"); PGADebugExited("PGAGetRestartFrequencyValue"); return (ctx->ga.restartFreq); } /*U**************************************************************************** PGASetRestartAlleleChangeProb - specifies the probability with which an allele will be mutated during a restart Category: Operators Inputs: ctx - context variable prob - probability of mutation Outputs: None Example: PGAContext *ctx; : PGASetRestartAlleleChangeProb(ctx, 0.5); ****************************************************************************U*/ void PGASetRestartAlleleChangeProb(PGAContext *ctx, double prob) { PGADebugEntered("PGASetRestartAlleleChangeProb"); if (prob >= 0.0 && prob <= 1.0) ctx->ga.restartAlleleProb = prob; else PGAError(ctx, "PGASetRestartAlleleChangeProb: Invalid probability:", PGA_FATAL, PGA_DOUBLE, (void *) &prob); PGADebugExited("PGASetRestartAlleleChangeProb"); } /*U**************************************************************************** PGAGetRestartAlleleChangeProb - returns the probability with which an allele will be mutated during a restart Category: Operators Inputs: ctx - context variable Outputs: The probability of mutating an allele during a restart. Example: PGAContext *ctx; : prob = PGASetRestartAlleleChangeProb(ctx); ****************************************************************************U*/ double PGAGetRestartAlleleChangeProb(PGAContext *ctx) { PGADebugEntered("PGAGetRestartAlleleChangeProb"); PGAFailIfNotSetUp("PGAGetRestartAlleleChangeProb"); PGADebugExited("PGAGetRestartAlleleChangeProb"); return (ctx->ga.restartAlleleProb); }